Biotea-2-Bioschemas test dataset

Biotea is contributing to Bioschemas by mapping its scholarly publication and annotation model to schema.org. Such mapping is currently a draft proposal to Bioschemas, more information can be found at the Biotea-2-Bioschemas group page.

Here we present a test dataset containing 2596 PubMed Central Open Access publications with annotations obtained via NCBO Annotator. Annotations have also been published in PubAnnotation. Articles, NCBO annotations and PubAnnotation annotations have beed deposited in Zenodo.

If you want to get the Bioschemas proposed markup for a publication, just add ?pmc=[PMCID] to this page URL. You can find a full list of the included articles in our sitemap. Some examples you can explore are:

• PMC35353: "A missense mutation (Q279R) in the Fumarylacetoacetate Hydrolase gene, responsible for hereditary tyros"
• PMC2141713: "The Amino-terminal Domain of Desmoplakin Binds to Plakoglobin and Clusters Desmosomal Cadherin–Plakoglobin Complexes"
• PMC2628407: "A Novel Function for Fragile X Mental Retardation Protein in Translational Activation"
• PMC:3308076 "A new category of autoinflammatory disease associated with NOD2 gene mutations"
PMC:3855541 "Increased circulating levels of betatrophin in individuals with long-standing type 1 diabetes"

Biotea-2-Bioschemas proposed markup

Publication metadata showed as a table and annotations (with more than one occurrence) as a tag cloud.

Go back to markup table